Journal Articles
Anderson, K.J., J. Kominoski, C.J. Choi, and U. Stingl. 2024. Functional effects of subsidies and stressors on benthic microbial communities along freshwater to marine gradients. Ecology : e4427
Julian, P., J.W. Fourqurean, S.E. Davis, D.D. Surratt, E.E. Gaiser, J. Kominoski, T. Troxler, J.N. Boyer, S.E. Thomas, H.O. Briceno, C.J. Madden, E. Montes, and C.R. Kelble. 2024. Long-term patterns and trends in water column biogeochemistry in a changing environment. Estuarine, Coastal and Shelf Science 306: 108896
Zhao, J., S. Chakrabarti, R.M. Chambers, P. Weisenhorn, R. Travieso, S. Stumpf, E. Standen, H.O. Briceno, T. Troxler, E.E. Gaiser, B. Dhillon, J. Kominoski, and W. Martens-Habbena. 2023. Year-around survey and manipulation experiments reveal differential sensitivities of soil prokaryotic and fungal communities to saltwater intrusion in Florida Everglades wetlands. Science of The Total Environment 858: 159865
He, D., S.N. Ladd, J. Park, J.P. Sachs, B.R.T. Simoneit, J.M. Smoak, and R. Jaffe. 2022. Carbon and hydrogen isotopes of taraxerol in mangrove leaves and sediment cores: implications for paleo-reconstructions. Geochimica et Cosmochimica Acta 324: 262-279
Laas, P., K. Ugarelli, R. Travieso, S. Stumpf, E.E. Gaiser, J. Kominoski, and U. Stingl. 2022. Water column microbial communities vary along salinity gradients in the Florida Coastal Everglades wetlands. Microorganisms 10: 215
Zhao, X., V.H. Rivera-Monroy, C. Li, I. Vargas-Lopez, R.V. Rohli, Z. Xue, E. Castañeda-Moya, and C. Coronado-Molina. 2022. Temperature across vegetation canopy-water-soil interfaces is modulated by hydroperiod and extreme weather in coastal wetlands. Frontiers in Marine Science 9: 52901
Chambers, R.M., A. Gorsky, E. Castañeda-Moya, and V.H. Rivera-Monroy. 2021. Evaluating a steady-state model of soil accretion in Everglades mangroves (Florida, USA). Estuaries and Coasts 44: 1469–1476
He, D., V.H. Rivera-Monroy, R. Jaffe, and X. Zhao. 2021. Mangrove leaf species-specific isotopic signatures along a salinity and phosphorus soil fertility gradients in a subtropical estuary. Estuarine, Coastal and Shelf Science 248: 106768
Zhao, X., V.H. Rivera-Monroy, L. Farfan, H.O. Briceno, E. Castañeda-Moya, R. Travieso, and E.E. Gaiser. 2021. Tropical cyclones cumulatively control regional carbon fluxes in Everglades mangrove wetlands (Florida, USA). Scientific Reports 11: 13927
Castañeda-Moya, E., V.H. Rivera-Monroy, R.M. Chambers, X. Zhao, L. Lamb-Wotton, A. Gorsky, E.E. Gaiser, T. Troxler, J. Kominoski, and M. Hiatt. 2020. Hurricanes fertilize mangrove forests in the Gulf of Mexico (Florida Everglades, USA). Proceedings of the National Academy of Sciences 117: 4831-4841
He, D., S.N. Ladd, C.J. Saunders, R.N. Mead, and R. Jaffe. 2020. Distribution of n-alkanes and their d2H and d13C values in typical plants along a terrestrial-coastal-oceanic gradient. Geochimica et Cosmochimica Acta 281: 31-52
Rezek, R., J. Massie, J. Nelson, R.O. Santos, N. Viadero, R. Boucek, and J.S. Rehage. 2020. Individual consumer movement mediates food web coupling across a coastal ecosystem
. Ecosphere 11: e03305
Zhao, X., V.H. Rivera-Monroy, H. Wang, Z. Xue, C. Tsai, C.S, Wilson, E. Castañeda-Moya, and R.R. Twilley. 2020. Modeling soil porewater salinity in mangrove forests (Everglades, Florida, USA) impacted by hydrological restoration and a warming climate. Ecological Modelling 436: 109292
Breithaupt, J.L., J.M. Smoak, C.J. Sanders, and T. Troxler. 2019. Spatial variability of organic carbon, CaCO3 and nutrient burial rates spanning a mangrove productivity gradient in the coastal Everglades. Ecosystems 22: 844-858
Rivera-Monroy, V.H., T. Danielson, E. Castañeda-Moya, B.D. Marx, R. Travieso, X. Zhao, E.E. Gaiser, and L. Farfan. 2019. Long-term demography and stem productivity of Everglades mangrove forests (Florida, USA): Resistance to hurricane disturbance. Forest Ecology and Management 440: 79-91
Davis, S.E., R. Boucek, E. Castañeda-Moya, S.B. Dessu, E.E. Gaiser, J. Kominoski, J.P. Sah, D.D. Surratt, and T. Troxler. 2018. Episodic disturbances drive nutrient dynamics along freshwater-to-estuary gradients in a subtropical wetland. Ecosphere 9: e02296
Dessu, S.B., R.M. Price, T. Troxler, and J. Kominoski. 2018. Effects of sea-level rise and freshwater management on long-term water levels and water quality in the Florida Coastal Everglades. Journal of Environmental Management 211: 164-176
He, D., B.R.T. Simoneit, J. Cloutier, and R. Jaffe. 2018. Early diagenesis of triterpenoids derived from mangroves in a subtropical estuary. Organic Geochemistry 125: 196-211
Danielson, T., V.H. Rivera-Monroy, E. Castañeda-Moya, H.O. Briceno, R. Travieso, B.D. Marx, E.E. Gaiser, and L. Farfan. 2017. Assessment of Everglades mangrove forest resilience: Implications for above-ground net primary productivity and carbon dynamics. Forest Ecology and Management 404: 115-125
Feliciano, E.A., S. Wdowinski, M. Potts, S.-K. Lee, and T.E. Fatoyinbo. 2017. Estimating mangrove canopy height and above-ground biomass in the Everglades National Park with airborne LiDAR and TanDEM-X data. Remote Sensing 9: 702
Julian, P., R.M. Chambers, and T. Russell. 2017. Iron and pyritization in wetland soils of the Florida Coastal Everglades. Estuaries and Coasts 40: 822-831
McKay, G., W. Huang, C. Romera-Castillo, J. Crouch, F. Rosario-Ortiz, and R. Jaffe. 2017. Predicting reactive intermediate quantum yields from dissolved organic matter photolysis using optical properties and antioxidant capacity. Environmental Science & Technology 51: 5404-5413
Yao, Q., and K.B. Liu. 2017. Dynamics of marsh-mangrove ecotone since the mid-Holocene: A palynological study of mangrove encroachment and sea level rise in the Shark River Estuary, Florida. PLoS ONE 12: e0173670
Boucek, R., M. Soula, F. Tamayo, and J.S. Rehage. 2016. A once in ten year drought alters the magnitude and quality of a floodplain trophic subsidy to coastal river fishes. Canadian Journal of Fisheries and Aquatic Sciences 73: 1672-1678
Malone, S.L., J.G. Barr, J.D. Fuentes, S. Oberbauer, E.E. Gaiser, and G. Starr. 2016. Sensitivity to low-temperature events: Implications for CO2 dynamics in subtropical coastal ecosystems. Wetlands 36: 957-967
Morris, J., D.C. Barber, J. Callaway, R.M. Chambers, S.C. Hagen, C. Hopkinson, B.J. Johnson, P. Megonigal, S.C. Neubauer, T. Troxler, and C. Wigand. 2016. Contributions of organic and inorganic matter to sediment volume and accretion in tidal wetlands at steady state. Earth's Future 4: 110-121
Regier, P., and R. Jaffe. 2016. Short-term dissolved organic carbon dynamics reflect tidal, water management, and precipitation patterns in a subtropical estuary. Frontiers in Marine Science 3: 250
Smith, C.G., R.M. Price, P.W. Swarzenski, and J.C. Stalker. 2016. The role of ocean tides on groundwater-surface water exchange in a mangrove-dominated estuary: Shark River Slough, Florida Coastal Everglades, USA. Estuaries and Coasts 39: 1600-1616
Lagomasino, D., R.M. Price, D. Whitman, A. Melesse, and S. Oberbauer. 2015. Spatial and temporal variability in spectral-based surface energy evapotranspiration measured from Landsat 5TM across two mangrove ecotones. Agricultural and Forest Meteorology 213: 304-316
Long, S.A., G.I. Tachiev, R. Fennema, A.M. Cook, M. Sukop, and F. Miralles-Wilhelm. 2015. Modeling the impact of restoration efforts on phosphorus loading and transport through Everglades National Park, FL, USA. Science of The Total Environment 520: 81-95
Pisani, O., L.J. Scinto, J. Munyon, and R. Jaffe. 2015. The respiration of flocculent detrital organic matter (floc) is driven by phosphorus limitation and substrate quality in a subtropical wetland. Geoderma 241: 272-278
Romera-Castillo, C., and R. Jaffe. 2015. Free radical scavenging (antioxidant activity) of natural dissolved organic matter. Marine Chemistry 177: 668-676
Troxler, T., J.G. Barr, J.D. Fuentes, V. Engel, G. Anderson, C. Sanchez, D. Lagomasino, R.M. Price, and S.E. Davis. 2015. Component-specific dynamics of riverine mangrove CO2 efflux in the Florida Coastal Everglades. Agricultural and Forest Meteorology 213: 273-282
Wagner, S., R. Jaffe, K.M. Cawley, T. Dittmar, and A. Stubbins. 2015. Associations between the molecular and optical properties of dissolved organic matter in the Florida Everglades: a model coastal wetland system. Frontiers in Chemistry 3: 66
Barr, J.G., M.S. DeLonge, and J.D. Fuentes. 2014. Seasonal evapotranspiration patterns in mangrove forests. Journal of Geophysical Research: Atmospheres 119: 3886-3899
He, D., B.R.T. Simoneit, B. Jara, and R. Jaffe. 2014. Occurrence and distribution of monomethylalkanes in the freshwater wetland ecosystem of the Florida Everglades. Chemosphere 119: 258-266
He, D., R.N. Mead, L. Belicka, O. Pisani, and R. Jaffe. 2014. Assessing source contributions to particulate organic matter in a subtropical estuary: A biomarker approach. Organic Geochemistry 75: 129-139
Lagomasino, D., R.M. Price, D. Whitman, P.K. Campbell, and A. Melesse. 2014. Estimating major ion and nutrient concentrations in mangrove estuaries in Everglades National Park using leaf and satellite reflectance. Remote Sensing of Environment 154: 202-218
Barr, J.G., J.D. Fuentes, M.S. DeLonge, T.L. O'Halloran, D. Barr, and J.C. Zieman. 2013. Summertime influences of tidal energy advection on the surface energy balance in a mangrove forest. Biogeosciences 10: 501-511
Barr, J.G., V. Engel, J.D. Fuentes, D. Fuller, and H.-H. Kwon. 2013. Modeling light use efficiency in a subtropical mangrove forest equipped with CO2 eddy covariance. Biogeosciences 10: 2145-2158
Jaffe, R., Y. Ding, J. Niggemann, A. Vahatalo, A. Stubbins, R.G.M. Spencer, J.L. Campbell, and T. Dittmar. 2013. Global charcoal mobilization from soils via dissolution and riverine transport to the oceans. Science 340: 345-347
Smoak, J.M., J.L. Breithaupt, T.J. Smith, and C.J. Sanders. 2013. Sediment accretion and organic carbon burial relative to sea-level rise and storm events in two mangrove forests in Everglades National Park. Catena 104: 58-66
Barr, J.G., V. Engel, T.J. Smith, and J.D. Fuentes. 2012. Hurricane disturbance and recovery of energy balance, CO2 fluxes and canopy structure in a mangrove forest of the Florida Everglades. Agricultural and Forest Meteorology 153: 54-66
Castañeda-Moya, E., R.R. Twilley, V.H. Rivera-Monroy, B.D. Marx, C. Coronado-Molina, and S.M.L. Ewe. 2011. Patterns of root dynamics in mangrove forests along environmental gradients in the Florida Coastal Everglades, USA. Ecosystems 14: 1178-1195
Fell, J.W., A. Statzell-Tallman, G. Scorzetti, and M.H. Gutierrez. 2011. Five new species of yeasts from fresh water and marine habitats in the Florida Everglades. Antonie van Leeuwenhoek 99: 533-549
Pisani, O., Y. Yamashita, and R. Jaffe. 2011. Photo-dissolution of flocculent, detrital material in aquatic environments: Contributions to the dissolved organic matter pool. Water Research 45: 3836-3844
Rosenblatt, A.E., and M.R. Heithaus. 2011. Does variation in movement tactics and trophic interactions among American alligators create habitat linkages? Journal of Animal Ecology 80: 786-798
Barr, J.G., V. Engel, J.D. Fuentes, J.C. Zieman, T.L. O'Halloran, T.J. Smith, and G. Anderson. 2010. Controls on mangrove forest-atmosphere carbon dioxide exchanges in western Everglades National Park. Journal of Geophysical Research - Biogeosciences 115: G02020
Ikenaga, M., R. Guevara, C. Pisani, A. Dean, and J.N. Boyer. 2010. Changes in community structure of sediment bacteria along the Florida Coastal Everglades marsh-mangrove-seagrass salinity gradient
. Microbial Ecology 59: 284-295
Matich, P., M.R. Heithaus, and C.A. Layman. 2010. Size-based variation in intertissue comparisons of stable carbon and nitrogen isotopic signatures of bull sharks (Carcharhinus leucas) and tiger sharks (Galeocerdo cuvier). Canadian Journal of Fisheries and Aquatic Sciences 67: 877-885
Xu, Y., and R. Jaffe. 2010. Occurrence, distribution and origin of C30 cyclobotryococcenes in a subtropical wetland/estuarine ecosystem. Chemosphere 81: 918-924
Barr, J.G., J.D. Fuentes, V. Engel, and J.C. Zieman. 2009. Physiological responses of red mangroves to the climate in the Florida Everglades. Journal of Geophysical Research - Biogeosciences 114: G02008
Heithaus, M.R., B. Delius, A.J. Wirsing, and M. Dunphy-Daly. 2009. Physical factors influencing the distribution of a top predator in a subtropical oligotrophic estuary. Limnology and Oceanography 54: 472-482
Mancera-Pineda, J.E., R.R. Twilley, and V.H. Rivera-Monroy. 2009. Carbon (d13c) and nitrogen (d15n) isotopic discrimination in mangroves in Florida Coastal Everglades as a function of environmental stress. Contributions in Marine Science 38: 109-129
Maie, N., N.M. Scully, O. Pisani, and R. Jaffe. 2007. Composition of a protein-like fluorophore of dissolved organic matter in coastal wetland and estuarine ecosystems. Water Research 41: 563-570
Rivera-Monroy, V.H., K. de Mutsert, R.R. Twilley, E. Castañeda-Moya, M.M. Romigh, and S.E. Davis. 2007. Patterns of nutrient exchange in a riverine mangrove forest in the Shark River Estuary, Florida, USA. Hidrobiológica 17: 169-178
Chambers, R.M., and K.A. Pederson. 2006. Variation in soil phosphorus, sulfur, and iron pools among south Florida wetlands. Hydrobiologia 569: 63-70
Jaffe, R., J.N. Boyer, X. Lu, N. Maie, C. Yang, N.M. Scully, and S. Mock. 2004. Source characterization of dissolved organic matter in a subtropical mangrove-dominated estuary by fluorescence analysis. Marine Chemistry 84: 195-210
Jaffe, R., R. Mead, M.E. Hernandez, M.C. Peralba, and O.A. DiGuida. 2001. Origin and transport of sedimentary organic matter in two subtropical estuaries: A comparative, biomarker-based study. Organic Geochemistry 32: 507-526