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PFAS, Coliform, and E. coli Data from Freshwater Canals, Brackish Water in Biscayne Bay, and Ocean Salt Water from Miami Beaches, Florida, USA, July 2023


At a Glance


Authors: Gary Yoham, Natalia Soares Quinete, Courtney Heath
Time period: 2023-07-27 to 2023-07-27
Package id: knb-lter-fce.1275.3

How to cite:
Yoham, G., N. Soares Quinete, C. Heath. 2024. PFAS, Coliform, and E. coli Data from Freshwater Canals, Brackish Water in Biscayne Bay, and Ocean Salt Water from Miami Beaches, Florida, USA, July 2023. Environmental Data Initiative. https://doi.org/10.6073/pasta/a86251dc84b19ff9760c2faedab5f821. Dataset accessed 2025-01-18.

Geographic Coverage


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Detailed Metadata


  • Dataset Creator(s)
    • Name: Gary Yoham 
    • Position: CE-BIORET
    • Organization: Florida International University
    • Email: gyoham@fiu.edu

    • Name: Natalia Soares Quinete 
    • Position: Assistant Professor
    • Organization: Florida International University
    • Email: nsoaresq@fiu.edu

    • Name: Courtney Heath 
    • Position: PhD Student, Environmental Chemistry
    • Organization: Florida International University
    • Email: cheat009@fiu.edu

  • Dataset Abstract
    This package contains data on levels of Per- and polyfluoroalkyl substances (PFAS), Coliform, and E. coli from samples collected at 15 water sampling sites in and around Biscayne Bay, Florida on 2023-07-27 as part of the Coastal Ecosystem-Research Experience for Teachers (CE-BIORETS) program. The sites included waterways leading to Biscayne Bay (freshwater canals), Biscayne Bay directly (marine brackish water), and ocean water from Miami beaches (marine salt water). A total of 500 mL of surface water was collected (at approximately 30 cm depth) from each site. Samples were run through a Solid Phase Extraction process (SPE) and then dried using a Nitrogen Evaporator. Extracts were then analyzed by Liquid Chromatography-Triple quadrupole Mass Spectrometry (LC-MS/MS) to determine the quantity of each of the different PFAS (ng/L) present in the sample. The same sites were selected for Coliform and E. coli colony forming units’ detection, and samples were collected at the same time as the PFAS samples. Samples were analyzed by pouring 100 mL of collected water into the wells on a ColiPlate. The 15 plates were incubated for 1 day at 37°C to determine if Coliforms and E. coli were detected. Data collection for this project is complete.
  • Geographic Coverage
    Bounding Coordinates
    Study extent of 15 water sampling sites in and around Biscayne Bay, Florida
    N: 25.930056, S: 25.771333, E: -80.118806, W: -80.210417

  • Attributes
    • Data Table:   PFAS and Coliform and E. coli levels data for July 2023 in and around Biscayne Bay in South Florida.
      Attribute Name:
      Sampling_Site
      Attribute Label:
      Attribute Definition:
      Name of each of the 15 sampling sites around Biscayne Bay and Miami Beach
      Storage Type:
      string
      Measurement Scale:
      text
      Missing Value Code:
       

      Attribute Name:
      Latitude
      Attribute Label:
      Latitude
      Attribute Definition:
      Latitude of the sample taken in degrees
      Storage Type:
      float
      Measurement Scale:
      Units: degree
      Number Type: real
      Missing Value Code:
       

      Attribute Name:
      Longitude
      Attribute Label:
      Longitude
      Attribute Definition:
      Longitude of the sample taken in degrees
      Storage Type:
      float
      Measurement Scale:
      Units: degree
      Number Type: real
      Missing Value Code:
       

      Attribute Name:
      Water_Type
      Attribute Label:
      Water Type
      Attribute Definition:
      Water type is either Marine or Canal
      Storage Type:
      string
      Measurement Scale:
      text
      Missing Value Code:
       

      Attribute Name:
      Date_Obtained
      Attribute Label:
      Date Collection
      Attribute Definition:
      This is the date the sample was collected in field
      Storage Type:
      dateTime
      Measurement Scale:
      Missing Value Code:
       

      Attribute Name:
      Date_of_Run
      Attribute Label:
      Date of Run
      Attribute Definition:
      This is the date the sample was run on the LC-MS/MS
      Storage Type:
      dateTime
      Measurement Scale:
      Missing Value Code:
       

      Attribute Name:
      PFBA
      Attribute Label:
      PFBA (ng/L)
      Attribute Definition:
      Perfluorobutanoic acid (PFBA) a short-chain member of the per- and polyfluoroalkyl substances (PFAS) group
      Storage Type:
      float
      Measurement Scale:
      Units: nanogramPerLiter
      Number Type: real
      Missing Value Code:
       

      Attribute Name:
      PFPeA
      Attribute Label:
      PFPeA (ng/L)
      Attribute Definition:
      Perfluoro-n-pentanoic acid (PFPeA) is a short-chain member of the per- and polyfluoroalkyl substances (PFAS) group
      Storage Type:
      float
      Measurement Scale:
      Units: nanogramPerLiter
      Number Type: real
      Missing Value Code:
       

      Attribute Name:
      PFBS
      Attribute Label:
      PFBS (ng/L)
      Attribute Definition:
      Perfluorobutane sulfonate (PFBS) is a short-chain member of the per- and polyfluoroalkyl substances (PFAS) group
      Storage Type:
      float
      Measurement Scale:
      Units: nanogramPerLiter
      Number Type: real
      Missing Value Code:
       

      Attribute Name:
      PFHxA
      Attribute Label:
      PFHxA (ng/L)
      Attribute Definition:
      Perfluorohexane sulfonate (PFHxS) is a short-chain member of the per- and polyfluoroalkyl substances (PFAS) group
      Storage Type:
      float
      Measurement Scale:
      Units: nanogramPerLiter
      Number Type: real
      Missing Value Code:
       

      Attribute Name:
      4_2FTS
      Attribute Label:
      4-2FTS (ng/L)
      Attribute Definition:
      4:2 Fluorotelomer sulfonic acid (4:2 FTS) is a short-chain member of the per- and polyfluoroalkyl substances (PFAS) group
      Storage Type:
      float
      Measurement Scale:
      Units: nanogramPerLiter
      Number Type: real
      Missing Value Code:
      -9999 (below method detection limit)

      Attribute Name:
      PFPeS
      Attribute Label:
      PFPeS (ng/L)
      Attribute Definition:
      Perfluoropentane sulfonic acid (PFPeS) is a short-chain member of the per- and polyfluoroalkyl substances (PFAS) group
      Storage Type:
      float
      Measurement Scale:
      Units: nanogramPerLiter
      Number Type: real
      Missing Value Code:
       

      Attribute Name:
      PFHpA
      Attribute Label:
      PFHpA (ng/L)
      Attribute Definition:
      Perfluoroheptanoic acid (PFHpA) is a short-chain member of the per- and polyfluoroalkyl substances (PFAS) group
      Storage Type:
      float
      Measurement Scale:
      Units: nanogramPerLiter
      Number Type: real
      Missing Value Code:
       

      Attribute Name:
      PFHxS
      Attribute Label:
      PFHxS (ng/L)
      Attribute Definition:
      Perfluorohexane sulfonic acid (PFHxS) is a short-chain member of the per- and polyfluoroalkyl substances (PFAS) group
      Storage Type:
      float
      Measurement Scale:
      Units: nanogramPerLiter
      Number Type: real
      Missing Value Code:
       

      Attribute Name:
      PFOA
      Attribute Label:
      PFOA (ng/L)
      Attribute Definition:
      Perfluorooctanoic acid (PFOA) is a long-chain member of the per- and polyfluoroalkyl substances (PFAS) group
      Storage Type:
      float
      Measurement Scale:
      Units: nanogramPerLiter
      Number Type: real
      Missing Value Code:
       

      Attribute Name:
      6_2FTS
      Attribute Label:
      6-2FTS (ng/L)
      Attribute Definition:
      6:2 Fluorotelomer sulfonic acid (6:2 FTS) is a long-chain member of the per- and polyfluoroalkyl substances (PFAS) group
      Storage Type:
      float
      Measurement Scale:
      Units: nanogramPerLiter
      Number Type: real
      Missing Value Code:
      -9999 (Below method detection limit)

      Attribute Name:
      PFOS
      Attribute Label:
      PFOS (ng/L)
      Attribute Definition:
      Perfluorooctane sulfonate (PFOS) is a long-chain member of the per- and polyfluoroalkyl substances (PFAS) group
      Storage Type:
      float
      Measurement Scale:
      Units: nanogramPerLiter
      Number Type: real
      Missing Value Code:
       

      Attribute Name:
      PFNA
      Attribute Label:
      PFNA (ng/L)
      Attribute Definition:
      Perfluorononanoic acid (PFNA) is a long-chain member of the per- and polyfluoroalkyl substances (PFAS) group
      Storage Type:
      float
      Measurement Scale:
      Units: nanogramPerLiter
      Number Type: real
      Missing Value Code:
       

      Attribute Name:
      Sum_PFAS
      Attribute Label:
      Sum PFAS (ng/L)
      Attribute Definition:
      This is the sum of all PFAS listed above at each of the 16 sampling sites.
      Storage Type:
      float
      Measurement Scale:
      Units: nanogramPerLiter
      Number Type: real
      Missing Value Code:
       

      Attribute Name:
      Long_Chain
      Attribute Label:
      Sum Long Chain (ng/L)
      Attribute Definition:
      Sum of all Long Chain PFAS (perfluoroalkyl carboxylic acids ≥7 Carbons or perfluoroalkyl sulfonic acids ≥ 6 carbons) found in samples such as PFOA, 6-2FTS, PFOS, and PFNA
      Storage Type:
      float
      Measurement Scale:
      Units: nanogramPerLiter
      Number Type: real
      Missing Value Code:
       

      Attribute Name:
      Short_Chain
      Attribute Label:
      Sum Short Chain (ng/L)
      Attribute Definition:
      Sum of all Short Chain (perfluoroalkyl carboxylic acids <7 Carbons or perfluoroalkyl sulfonic acids < 6 carbons) PFAS found in samples such as PFBA, PFPeA, PFBS, PFHxA, 4-2FTS, PFPeS, PFHpA, and PFHxS
      Storage Type:
      float
      Measurement Scale:
      Units: nanogramPerLiter
      Number Type: real
      Missing Value Code:
       

      Attribute Name:
      Total_Coliforms
      Attribute Label:
      Total Coliforms (cfu/100mL)
      Attribute Definition:
      Total Coliform forming-units per 100 milliliter detected in sample.
      Storage Type:
      float
      Measurement Scale:
      Units: ColonyFormingUnitPer100Milliliter
      Number Type: real
      Missing Value Code:
      -9999 (sample was missing or not detected)

      Attribute Name:
      E_coli
      Attribute Label:
      E. coli (cfu/100mL)
      Attribute Definition:
      Total E. coli forming-units per 100 milliliter detected in sample
      Storage Type:
      float
      Measurement Scale:
      Units: ColonyFormingUnitPer100Milliliter
      Number Type: real
      Missing Value Code:
      -9999 (sample was missing or not detected)

      Attribute Name:
      4_2FTS_flag
      Attribute Label:
      4_2FTS_flag
      Attribute Definition:
      Flag for 4_2FTS values
      Storage Type:
      string
      Measurement Scale:
      <MDL= Value below minimum detection limit of 0.02 ng/L
      VALID= Sample value is above the detection limit of 0.02 ng/L
      Missing Value Code:
       

      Attribute Name:
      6_2FTS_flag
      Attribute Label:
      6_2FTS_flag
      Attribute Definition:
      Flag for 6_2FTS values
      Storage Type:
      string
      Measurement Scale:
      <MDL= Value below minimum detection limit of 0.02 ng/L
      VALID= Sample value is above the detection limit of 0.02 ng/L
      Missing Value Code:
       


  • Methods
    Method Step

    Description
    We selected 15 sites that included waterways leading to Biscayne Bay (freshwater canals), Biscayne Bay directly (marine brackish water), and ocean water (marine salt water). A total of 500 mL of surface water was collected (at approximately 30 cm depth) in clean polypropylene bottles from each site. Samples were first run through a Solid Phase Extraction process (SPE) using Strata XL-AW 100 μm polymeric weak anion cartridges (500 mg / 6 mL). For the SPE process, cartridges are first conditioned with 6 mL of 1% ammonium hydroxide in methanol, 6 mL of methanol and equilibrated with 6 mL of water. Then samples are loaded onto the cartridge for concentration of the compounds of interest. Lastly, PFAS were eluted from the cartridges with basic methanol (0.3% ammonium hydroxide in methanol), and then dried using a Nitrogen Evaporator. Dried samples were reconstituted to a final volume of 0.5 mL. Extracts were then analyzed by Liquid Chromatography-Triple quadrupole Mass Spectrometry (LC-MS/MS) to determine the quantity of each of the different PFAS (ng/L) present in the sample. LC-MS/MS data was processed by the Agilent Software Masshunter. The same sites were selected for Coliform and E. coli colony forming units’ detection, and samples were collected at the same time as the PFAS samples but using autoclaved 500 mL glass bottles. Samples were analyzed by pouring 100 mL of collected water into the wells on a ColiPlate. The 15 plates were incubated for 1 day at 37°C. If wells on the plates turned from yellowish to blue/green color after the incubation period, this represented a positive indication for Coliforms. If the blue/green well showed fluorescence also, that well was positive for E. coli. The most probable number (MPN) table of colony forming-units per 100 mL was used to determine the number of colonies present in each sample.


  • Distribution and Intellectual Rights
    Online distribution
    https://pasta.lternet.edu/package/data/eml/knb-lter-fce/1275/3/9a2a07dea9125e25528ca4c1e79af89d
    Intellectual Rights
    This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data ("Data User" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

  • Keywords
    Biscayne Bay, Per- and polyfluoroalkyl substances, PFAS, FCE LTER, LTER, Florida Coastal Everglades LTER, human disturbance, bacteria, water quality, disturbance
  • Dataset Contact
    • Name: Gary Yoham 
    • Position: CE-BIORET
    • Organization: Florida International University
    • Email: gyoham@fiu.edu

    • Name: Natalia Soares Quinete 
    • Position: Assistant Professor
    • Organization: Florida International University
    • Email: nsoaresq@fiu.edu

    • Position: Information Manager
    • Organization: Florida Coastal Everglades LTER
    • Address: Florida International University
      11200 SW 8th Street, OE 148
      Miami, FL 33199 USA
    • Email: fcelter@fiu.edu
    • URL: https://fcelter.fiu.edu

  • Data Table and Format
    Data Table:  PFAS and Coliform and E. coli levels data for July 2023 in and around Biscayne Bay in South Florida.

    Entity Name:
    FCE_1275_PFAS_E_coli_levels.csv
    Entity Description:
    PFAS and Coliform and E. coli levels data for July 2023 in and around Biscayne Bay in South Florida.
    Object Name:
    FCE_1275_PFAS_E_coli_levels.csv
    Number of Header Lines:
    1
    Attribute Orientation:
    column
    Field Delimiter:
    ,
    Number of Records:
    15