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Root biomass, productivity, and turnover of riverine and scrub mangroves in the Everglades, Florida, USA, 2000-2006


At a Glance


(Zip file containing 4 files)

Authors: Edward Castañeda-Moya, Robert Twilley, Victor H. Rivera-Monroy
Time period: 2000-01-01 to 2006-12-31
Package id: knb-lter-fce.1277.1

How to cite:
Castañeda-Moya, E., R. Twilley, V. Rivera-Monroy. 2025. Root biomass, productivity, and turnover of riverine and scrub mangroves in the Everglades, Florida, USA, 2000-2006. Environmental Data Initiative. https://doi.org/10.6073/pasta/e38fb9444ffa7010180ecdd50ffe0b68. Dataset accessed 2025-01-18.

Geographic Coverage
This data set contains the following files.

FCE1277_Root_Biomass_pre-hurricane.csv
Mangrove root biomass in the shallow (0-45cm) and deeper (45-90cm) root zones
Attribute table details     Download

FCE1277_Root_Production_pre-hurricane.csv
Root production in the shallow (0-45 cm) and deeper (45-90 cm) root zones
Attribute table details     Download

FCE1277_Root_Turnover_pre-hurricane.csv
Root turnover rates of mangroves
Attribute table details     Download

FCE1277_Root_NP_pre-hurricane.csv
Root nutrient concentrations
Attribute table details     Download



View detailed metadata as:   HTML    Text    XML


Detailed Metadata


  • Dataset Creator(s)
    • Name: Edward Castañeda-Moya 
    • Organization: Florida International University
    • Address: Miami, FL 33199 US
    • Phone: 3373225158
    • Email: ecastane@fiu.edu

    • Name: Robert Twilley 
    • Organization: Louisiana State University
    • Email: rtwilley@lsu.edu

    • Name: Victor H. Rivera-Monroy 
    • Organization: Louisiana State University
    • Email: vhrivera@lsu.edu

  • Dataset Abstract
    Mangrove root biomass and productivity in the shallow (0-45 cm depth) and deeper (45-90 cm) root zones were estimated at Florida Coastal Everglades Long Term Ecological Research (FCE-LTER) Program Shark River (SRS4, SRS5, SRS6) and Taylor River (TS/Ph6b, TS/Ph7b, TS/Ph8) mangrove sites during 2000-2006. Root biomass was estimated at all sites using a PVC coring device (10.2 cm diameter x 45 cm length). After collection, root cores from each zone were processed individually and initially rinsed with water through a 1-mm screen mesh to remove soil particles. Live roots were separated manually based on their buoyancy, turgor, and color. Live roots were further sorted into three size diameter classes including fine (<2 mm), small (2-5 mm), and coarse (5-20 mm). Roots greater than 20 mm in diameter were not included in this study due to sampling limitations (i.e., core area). All root samples were oven-dried at 60°C to a constant mass and weighed to estimate root biomass (g m-2). Root productivity was estimated with the ingrowth core technique (Vogt et al., 1998). Ingrowth cores (10.2 cm diameter x 45 cm length) were made of synthetic material (3 mm mesh) and filled with root-free commercial sphagnum peat moss. This material has similar soil properties (i.e., bulk density, organic matter content, total C and N) as mangrove peat in our study sites. Ingrowth cores were installed in each of the cored holes formed during sampling of root biomass. At each site, ingrowth cores were deployed vertically into the soil and retrieved at one- and three-year intervals, and the subsequent root growth within the ingrowth core was used to estimate annual root production (g m-2 yr-1) in the shallow and deeper root zones across all mangrove sites. After collection, ingrowth cores were processed individually using the same protocol as for root biomass. Root turnover rate in the shallow root zone was calculated as root productivity divided by root biomass of each root size class at all sites. Data in this package is associated with Castañeda-Moya et al. (2011). Data collection for this package is complete.
    References:
    Castañeda-Moya, E., R.R. Twilley, V.H. Rivera-Monroy, B.D. Marx, C. Coronado-Molina, and S.M.L. Ewe. 2011. Patterns of root dynamics in mangrove forests along environmental gradients in the Florida Coastal Everglades, USA. Ecosystems 14: 1178-1195. https://doi.org/10.1007/s10021-011-9473-3.
    Vogt, K.A., D.J. Vogt, J. Bloomfield. 1998. Analysis of some direct and indirect methods for estimating root biomass and production of forests at an ecosystem level. Plant Soil 200:71–89.
  • Geographic Coverage
    Bounding Coordinates
    FCE LTER Site SRS4
    N: 25.40976421, S: 25.40976421, E: -80.96431016, W: -80.96431016

    FCE LTER Site SRS5
    N: 25.37702258, S: 25.37702258, E: -81.03234716, W: -81.03234716

    FCE LTER Site SRS6
    N: 25.36462994, S: 25.36462994, E: -81.07794623, W: -81.07794623

    FCE LTER Site TS/Ph6b
    N: 25.21609115, S: 25.21609115, E: -80.65101654, W: -80.65101654

    FCE LTER Site TS/Ph7b
    N: 25.19676203, S: 25.19676203, E: -80.64207766, W: -80.64207766

    FCE LTER Site TS/Ph8
    N: 25.23269749, S: 25.23269749, E: -80.52455665, W: -80.52455665

  • Attributes
    • Data Table:   Mangrove root biomass in the shallow (0-45cm) and deeper (45-90cm) root zones
      Attribute Name:
      SITENAME
      Attribute Label:
      SITENAME
      Attribute Definition:
      Sitename
      Storage Type:
      string
      Measurement Scale:
      SRS4= site
      SRS5= site
      SRS6= site
      TS/Ph6b= site
      TS/Ph7b= site
      TS/Ph8= site
      Missing Value Code:
       

      Attribute Name:
      Sampling_period
      Attribute Label:
      Sampling_period
      Attribute Definition:
      Sampling period
      Storage Type:
      string
      Measurement Scale:
      Pre-hurricane= Pre-hurricane
      Missing Value Code:
       

      Attribute Name:
      Experiment_ID
      Attribute Label:
      Experiment_ID
      Attribute Definition:
      Experiment ID
      Storage Type:
      string
      Measurement Scale:
      1= Experiment ID
      2= Experiment ID
      Missing Value Code:
       

      Attribute Name:
      Method_collection
      Attribute Label:
      Method_collection
      Attribute Definition:
      Method of collection
      Storage Type:
      string
      Measurement Scale:
      Root cores= Method of collection
      Missing Value Code:
       

      Attribute Name:
      Month
      Attribute Label:
      Month
      Attribute Definition:
      Calendar month
      Storage Type:
      float
      Measurement Scale:
      Units: dimensionless
      Number Type: real
      Missing Value Code:
       

      Attribute Name:
      Year
      Attribute Label:
      Year
      Attribute Definition:
      Year
      Storage Type:
      dateTime
      Measurement Scale:
      Missing Value Code:
       

      Attribute Name:
      Point
      Attribute Label:
      Point
      Attribute Definition:
      Sampling point
      Storage Type:
      string
      Measurement Scale:
      1= Sampling point
      2= Sampling point
      3= Sampling point
      4= Sampling point
      5= Sampling point
      Missing Value Code:
       

      Attribute Name:
      Position
      Attribute Label:
      Position
      Attribute Definition:
      Position
      Storage Type:
      string
      Measurement Scale:
      Edge= Edge
      Inland= Inland
      Missing Value Code:
       

      Attribute Name:
      Location
      Attribute Label:
      Location
      Attribute Definition:
      Sampling depth
      Storage Type:
      string
      Measurement Scale:
      0-45cm= Shallow root zone
      45-90cm= Deeper root zone
      Missing Value Code:
       

      Attribute Name:
      Core_ID
      Attribute Label:
      Core_ID
      Attribute Definition:
      Core ID
      Storage Type:
      integer
      Measurement Scale:
      Units: dimensionless
      Number Type: real
      Missing Value Code:
       

      Attribute Name:
      Root_size
      Attribute Label:
      Root_size
      Attribute Definition:
      Root size diameter
      Storage Type:
      string
      Measurement Scale:
      <2mm= Fine roots
      2-5mm= Small roots
      >5mm= Coarse roots
      Missing Value Code:
       

      Attribute Name:
      Root_size_class
      Attribute Label:
      Root_size_class
      Attribute Definition:
      Root size class
      Storage Type:
      string
      Measurement Scale:
      Fine= Fine roots
      Small= Small roots
      Coarse= Coarse roots
      Missing Value Code:
       

      Attribute Name:
      Root_Biomass
      Attribute Label:
      Root_Biomass
      Attribute Definition:
      Root biomass
      Storage Type:
      float
      Measurement Scale:
      Units: gramPerMeterSquared
      Precision: 0.1
      Number Type: real
      Missing Value Code:
       


    • Data Table:   Root production in the shallow (0-45 cm) and deeper (45-90 cm) root zones
      Attribute Name:
      SITENAME
      Attribute Label:
      SITENAME
      Attribute Definition:
      Sitename
      Storage Type:
      string
      Measurement Scale:
      SRS4= site
      SRS5= site
      SRS6= site
      TS/Ph6b= site
      TS/Ph7b= site
      TS/Ph8= site
      Missing Value Code:
       

      Attribute Name:
      Sampling_period
      Attribute Label:
      Sampling_period
      Attribute Definition:
      Sampling period
      Storage Type:
      string
      Measurement Scale:
      Pre-hurricane= Pre-hurricane
      Missing Value Code:
       

      Attribute Name:
      Method_collection
      Attribute Label:
      Method_collection
      Attribute Definition:
      Method of collection
      Storage Type:
      string
      Measurement Scale:
      Ingrowth cores= Ingrowth cores
      Missing Value Code:
       

      Attribute Name:
      Ingrowth_harvest
      Attribute Label:
      Ingrowth_harvest
      Attribute Definition:
      Ingrowth harvest ID
      Storage Type:
      string
      Measurement Scale:
      1= Harvest 1
      2= Harvest 2
      Missing Value Code:
       

      Attribute Name:
      Month
      Attribute Label:
      Month
      Attribute Definition:
      Calendar month
      Storage Type:
      float
      Measurement Scale:
      Units: dimensionless
      Number Type: real
      Missing Value Code:
       

      Attribute Name:
      Year
      Attribute Label:
      Year
      Attribute Definition:
      Year
      Storage Type:
      dateTime
      Measurement Scale:
      Missing Value Code:
       

      Attribute Name:
      Point
      Attribute Label:
      Point
      Attribute Definition:
      Sampling point
      Storage Type:
      string
      Measurement Scale:
      1= 1
      2= 2
      3= 3
      4= 4
      5= 5
      A= A
      B= B
      C= C
      D= D
      island1= island1
      island2= island2
      island3= island3
      island4= island4
      island5= island5
      Missing Value Code:
       

      Attribute Name:
      Position
      Attribute Label:
      Position
      Attribute Definition:
      Position
      Storage Type:
      string
      Measurement Scale:
      Edge= Edge
      Inland= Inland
      Missing Value Code:
       

      Attribute Name:
      Location
      Attribute Label:
      Location
      Attribute Definition:
      Location
      Storage Type:
      string
      Measurement Scale:
      0-45cm= Shallow root zone
      45-90cm= Deeper root zone
      Missing Value Code:
       

      Attribute Name:
      Ingrowth_tag_ID
      Attribute Label:
      Ingrowth_tag_ID
      Attribute Definition:
      Ingrowtht tag ID
      Storage Type:
      integer
      Measurement Scale:
      Units: dimensionless
      Number Type: integer
      Missing Value Code:
       

      Attribute Name:
      Core_ID
      Attribute Label:
      Core_ID
      Attribute Definition:
      Core ID
      Storage Type:
      integer
      Measurement Scale:
      Units: dimensionless
      Number Type: integer
      Missing Value Code:
       

      Attribute Name:
      Root_size
      Attribute Label:
      Root_size
      Attribute Definition:
      Root size diameter
      Storage Type:
      string
      Measurement Scale:
      <2mm= Fine roots
      2-5mm= Small roots
      >5mm= Coarse roots
      Missing Value Code:
       

      Attribute Name:
      Root_size_class
      Attribute Label:
      Root_size_class
      Attribute Definition:
      Root size class
      Storage Type:
      string
      Measurement Scale:
      Fine= Fine roots
      Small= Small roots
      Coarse= Coarse roots
      Missing Value Code:
       

      Attribute Name:
      Root_Production
      Attribute Label:
      Root_Production
      Attribute Definition:
      Root Production
      Storage Type:
      float
      Measurement Scale:
      Units: gramPerMeterSquaredPerYear
      Precision: 0.1
      Number Type: real
      Missing Value Code:
       


    • Data Table:   Root turnover rates of mangroves
      Attribute Name:
      SITENAME
      Attribute Label:
      SITENAME
      Attribute Definition:
      Sitename
      Storage Type:
      string
      Measurement Scale:
      SRS4= site
      SRS5= site
      SRS6= site
      TS/Ph6b= site
      TS/Ph7b= site
      TS/Ph8= site
      Missing Value Code:
       

      Attribute Name:
      Sampling_period
      Attribute Label:
      Sampling_period
      Attribute Definition:
      Sampling period
      Storage Type:
      string
      Measurement Scale:
      Pre-hurricane= Pre-hurricane
      Missing Value Code:
       

      Attribute Name:
      Point
      Attribute Label:
      Point
      Attribute Definition:
      Sampling point
      Storage Type:
      string
      Measurement Scale:
      1= 1
      2= 2
      3= 3
      4= 4
      5= 5
      Missing Value Code:
       

      Attribute Name:
      Location
      Attribute Label:
      Location
      Attribute Definition:
      Location
      Storage Type:
      string
      Measurement Scale:
      0-45cm= Shallow root zone
      Missing Value Code:
       

      Attribute Name:
      Root_size
      Attribute Label:
      Root_size
      Attribute Definition:
      Root size diameter
      Storage Type:
      string
      Measurement Scale:
      <2mm= Fine roots
      2-5mm= Small roots
      >5mm= Coarse roots
      Missing Value Code:
       

      Attribute Name:
      Root_size_class
      Attribute Label:
      Root_size_class
      Attribute Definition:
      Root size class
      Storage Type:
      string
      Measurement Scale:
      Fine= Fine roots
      Small= Small roots
      Coarse= Coarse roots
      Missing Value Code:
       

      Attribute Name:
      Root_Turnover_Rate
      Attribute Label:
      Root_Turnover_Rate
      Attribute Definition:
      Root turnover rate
      Storage Type:
      float
      Measurement Scale:
      Units: perYear
      Precision: 0.001
      Number Type: real
      Missing Value Code:
       


    • Data Table:   Root nutrient concentrations
      Attribute Name:
      SITENAME
      Attribute Label:
      SITENAME
      Attribute Definition:
      Sitename
      Storage Type:
      string
      Measurement Scale:
      text
      Missing Value Code:
       

      Attribute Name:
      Sampling_period
      Attribute Label:
      Sampling_period
      Attribute Definition:
      Sampling period
      Storage Type:
      string
      Measurement Scale:
      Pre-hurricane= Pre-hurricane
      Missing Value Code:
       

      Attribute Name:
      Experiment_ID
      Attribute Label:
      Experiment_ID
      Attribute Definition:
      Experiment ID
      Storage Type:
      string
      Measurement Scale:
      1= 1
      Missing Value Code:
       

      Attribute Name:
      Position
      Attribute Label:
      Position
      Attribute Definition:
      Position
      Storage Type:
      string
      Measurement Scale:
      Edge= Edge
      Inland= Inland
      Missing Value Code:
       

      Attribute Name:
      Location
      Attribute Label:
      Location
      Attribute Definition:
      Location
      Storage Type:
      string
      Measurement Scale:
      0-45cm= Shallow root zone
      Missing Value Code:
       

      Attribute Name:
      Root_Total_N
      Attribute Label:
      Root_Total_N
      Attribute Definition:
      Root total N
      Storage Type:
      float
      Measurement Scale:
      Units: milligramPerGram
      Precision: 0.01
      Number Type: real
      Missing Value Code:
       

      Attribute Name:
      Root_Total_P
      Attribute Label:
      Root_Total_P
      Attribute Definition:
      Root total P
      Storage Type:
      float
      Measurement Scale:
      Units: milligramPerGram
      Precision: 0.01
      Number Type: real
      Missing Value Code:
       

      Attribute Name:
      Root_Total_N_density
      Attribute Label:
      Root_Total_N_density
      Attribute Definition:
      Root total N density
      Storage Type:
      float
      Measurement Scale:
      Units: milligramPerCentimeterCubed
      Precision: 0.001
      Number Type: real
      Missing Value Code:
       

      Attribute Name:
      Root_Total_P_density
      Attribute Label:
      Root_Total_P_density
      Attribute Definition:
      Root total P density
      Storage Type:
      float
      Measurement Scale:
      Units: microgramPerCentimeterCubed
      Precision: 0.01
      Number Type: real
      Missing Value Code:
       

      Attribute Name:
      Root_Atomic_N_P
      Attribute Label:
      Root_Atomic_N:P
      Attribute Definition:
      Root atomic N:P ratio
      Storage Type:
      float
      Measurement Scale:
      Units: dimensionless
      Precision: 0.1
      Number Type: real
      Missing Value Code:
       


  • Methods
    Method Step

    Description
    Mangrove root biomass and productivity in the shallow (0-45 cm depth) and deeper (45-90 cm) root zones were estimated at Florida Coastal Everglades Long Term Ecological Research (FCE-LTER) Program Shark River (SRS4, SRS5, SRS6) and Taylor River (TS/Ph6b, TS/Ph7b, TS/Ph8) mangrove sites during 2000-2006. Root biomass was estimated at all sites using a PVC coring device (10.2 cm diameter x 45 cm length). After collection, root cores from each zone were processed individually and initially rinsed with water through a 1-mm screen mesh to remove soil particles. Live roots were separated manually based on their buoyancy, turgor, and color. Live roots were further sorted into three size diameter classes including fine (<2 mm), small (2-5 mm), and coarse (5-20 mm). Roots greater than 20 mm in diameter were not included in this study due to sampling limitations (i.e., core area). All root samples were oven-dried at 60°C to a constant mass and weighed to estimate root biomass (g m-2). Root productivity was estimated with the ingrowth core technique (Vogt et al., 1998). Ingrowth cores (10.2 cm diameter x 45 cm length) were made of synthetic material (3 mm mesh) and filled with root-free commercial sphagnum peat moss. This material has similar soil properties (i.e., bulk density, organic matter content, total C and N) as mangrove peat in our study sites. Ingrowth cores were installed in each of the cored holes formed during sampling of root biomass. At each site, ingrowth cores were deployed vertically into the soil and retrieved at one- and three-year intervals, and the subsequent root growth within the ingrowth core was used to estimate annual root production (g m-2 yr-1) in the shallow and deeper root zones across all mangrove sites. After collection, ingrowth cores were processed individually using the same protocol as for root biomass. Root turnover rate in the shallow root zone was calculated as root productivity divided by root biomass of each root size class at all sites. Data in this package is associated with Castañeda-Moya et al. (2011).

    References:

    Castañeda-Moya, E., R.R. Twilley, V.H. Rivera-Monroy, B.D. Marx, C. Coronado-Molina, and S.M.L. Ewe. 2011. Patterns of root dynamics in mangrove forests along environmental gradients in the Florida Coastal Everglades, USA. Ecosystems 14: 1178-1195. https://doi.org/10.1007/s10021-011-9473-3.

    Vogt, K.A., D.J. Vogt, J. Bloomfield. 1998. Analysis of some direct and indirect methods for estimating root biomass and production of forests at an ecosystem level. Plant Soil 200:71–89.


  • Distribution and Intellectual Rights
    Online distribution
    https://pasta.lternet.edu/package/data/eml/knb-lter-fce/1277/1/8265f084ccd4562552e3f87746ead69a
    Intellectual Rights
    This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data ("Data User" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

  • Keywords
    Root biomass, Root productivity, Root turnover, Belowground allocation, P availability, FCE LTER, LTER, Florida Coastal Everglades LTER, mangroves, primary production, primary production
  • Dataset Contact
    • Name: Edward Castañeda-Moya 
    • Organization: Florida International University
    • Address: Miami, FL 33199 US
    • Phone: 3373225158
    • Email: ecastane@fiu.edu

    • Position: Information Manager
    • Organization: Florida Coastal Everglades LTER
    • Address: Florida International University
      11200 SW 8th Street, OE 148
      Miami, FL 33199 USA
    • Email: fcelter@fiu.edu
    • URL: https://fcelter.fiu.edu

  • Data Table and Format
    Data Table:  Mangrove root biomass in the shallow (0-45cm) and deeper (45-90cm) root zones

    Entity Name:
    FCE1277_Root_Biomass_pre-hurricane.csv
    Entity Description:
    Mangrove root biomass in the shallow (0-45cm) and deeper (45-90cm) root zones
    Object Name:
    FCE1277_Root_Biomass_pre-hurricane.csv
    Number of Header Lines:
    1
    Attribute Orientation:
    column
    Field Delimiter:
    ,
    Number of Records:
    687

    Data Table:  Root production in the shallow (0-45 cm) and deeper (45-90 cm) root zones

    Entity Name:
    FCE1277_Root_Production_pre-hurricane.csv
    Entity Description:
    Root production in the shallow (0-45 cm) and deeper (45-90 cm) root zones
    Object Name:
    FCE1277_Root_Production_pre-hurricane.csv
    Number of Header Lines:
    1
    Attribute Orientation:
    column
    Field Delimiter:
    ,
    Number of Records:
    621

    Data Table:  Root turnover rates of mangroves

    Entity Name:
    FCE1277_Root_Turnover_pre-hurricane.csv
    Entity Description:
    Root turnover rates of mangroves
    Object Name:
    FCE_1277_Root_Turnover_pre-hurricane.csv
    Number of Header Lines:
    1
    Attribute Orientation:
    column
    Field Delimiter:
    ,
    Number of Records:
    68

    Data Table:  Root nutrient concentrations

    Entity Name:
    FCE1277_Root_NP_pre-hurricane.csv
    Entity Description:
    Root nutrient concentrations
    Object Name:
    FCE_1277_Root_NP_pre-hurricane.csv
    Number of Header Lines:
    1
    Attribute Orientation:
    column
    Field Delimiter:
    ,
    Number of Records:
    24

  • Project permits
    National Park Service scientific research and collecting permit EVER-2001-SCI-0071
    National Park Service scientific research and collecting permit EVER-2002-SCI-0070
    National Park Service scientific research and collecting permit EVER-2003-SCI-0067
    National Park Service scientific research and collecting permit EVER-2004-SCI-0070
    National Park Service scientific research and collecting permit EVER-2005-SCI-0081