Stomach contents (1977-1981) and stable isotopes (1994) from the Everglades, Florida, USA from the publication "Fishes in a seasonally pulsed wetland show spatiotemporal shifts in diet and trophic niche but not shifts in trophic position"
At a Glance
Authors: Peter Flood, William Loftus, Joel Trexler
Time period: 1977-01-01 to 1994-12-31
Package id: knb-lter-fce.1263.3
Flood, P., W. Loftus, J. Trexler. 2025. Stomach contents (1977-1981) and stable isotopes (1994) from the Everglades, Florida, USA from the publication "Fishes in a seasonally pulsed wetland show spatiotemporal shifts in diet and trophic niche but not shifts in trophic position". Environmental Data Initiative. https://doi.org/10.6073/pasta/c65efbbec61cfe1e70de11fe511d6830. Dataset accessed 2025-01-18.
Geographic Coverage
This data set contains the following files.
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Food_Webs_2023_manuscript_stomach_content_data
Stomach content data collected for fishes from Everglades National Parked between 1977 and 1981. This file is a combined version of counts and volume that is cleaned and convenient to work with. Use the wide-format files to rerun the associated R code.
Attribute table details Download
Food_Webs_2023_manuscript_stable_isotope_data
Stable isotope data for fishes, invertebrates, and basal resources from Everglades National Park collected from wet-season spikerush-dominated marshes in 1994.
Attribute table details Download
All_Specimen_by_Number_Correct
Wide format of counts of stomachs.
Attribute table details Download
View detailed metadata as: HTML Text XML
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Dataset Creator(s)
- Name: Dr. Peter Flood
- Position: Postdoctoral Research Fellow
- Email: pjfloodecology@gmail.com
- URL: https://sites.google.com/view/peterjflood-ecology/home?authuser=0
- Name: Dr. William Loftus
- Organization: Aquatic Research & Communication LLC
- Email: arc_wfl@bellsouth.net
- Name: Dr. Joel Trexler
- Position: Director of the Coastal and Marine Laboratory and Professor of Biological Science
- Organization: Florida State University
- Email: jtrexler@fsu.edu
- URL: https://trexlerlab.wordpress.com/
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Dataset AbstractStomach contents of fishes (1977-1981) and stable isotopes of fishes, invertebrates, and basal resources (1994) were collected from spikerush marsh, sawgrass ridge, and alligator pond habitats in Shark River Slough, Everglades National Park, Florida, USA. These data were used to quantify diet, trophic niche area, trophic position, basal resource use and how these metrics vary among size classes, seasons, and habitats. Data collection is complete. These data support Flood et al. (2023). Associated R code will be made available through Peter Flood's GitHub: https://github.com/pjflood/historic_everglades_aquatic_food_web.
References:
Flood, Peter J., William F. Loftus, and Joel C. Trexler. "Fishes in a seasonally pulsed wetland show spatiotemporal shifts in diet and trophic niche but not shifts in trophic position." Food Webs 34 (2023): e00265. https://doi.org/10.1016/j.fooweb.2022.e00265
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Geographic CoverageBounding Coordinates
Original data were collected in the 1970s prior to widespread use of handheld GPS devices and precision geo-location. Data were collected in roughly a one-square kilometer area in north-central Shark River Slough centered on -80.7287, 25.6348.
N: 25.6348, S: 25.6348, E: -80.7287, W: -80.7287
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Temporal CoverageStart Date: 1977
End Date: 1994
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Attributes
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Data Table: Stomach content data collected for fishes from Everglades National Parked between 1977 and 1981. This file is a combined version of counts and volume that is cleaned and convenient to work with. Use the wide-format files to rerun the associated R code.Attribute Name:IDAttribute Label:IDAttribute Definition:Unique identifier for individual samples (e.g., an individual fish)Storage Type:floatMeasurement Scale:Units: numberNumber Type: integerMissing Value Code:Attribute Name:SpeciesAttribute Label:SpeciesAttribute Definition:Genus and species for that fishStorage Type:stringMeasurement Scale:textMissing Value Code:NA (No species recorded)Attribute Name:SizeAttribute Label:SizeAttribute Definition:Numeric size class based on standard lengthStorage Type:stringMeasurement Scale:1= size class 1
2= size class 2
3= size class 3
4= size class 4
Missing Value Code:Attribute Name:SeasonAttribute Label:SeasonAttribute Definition:Season, either wet or dry, in which the sample was collectedStorage Type:stringMeasurement Scale:Dry= Collected in April
Wet= Collected between January and early March
Missing Value Code:Attribute Name:HabitatAttribute Label:HabitatAttribute Definition:Habitat in which the sample was collectedStorage Type:stringMeasurement Scale:Pond= Alligator-engineered pond
Sawgrass= Sawgrass (Cladium jamaicense) dominated marsh
Spikerush= Spikerush (Eleocharis spp) dominated marsh
Missing Value Code:Attribute Name:SLAttribute Label:SLAttribute Definition:Standard length of that fishStorage Type:floatMeasurement Scale:Units: millimeterNumber Type: realMissing Value Code:NA (SL was not recorded)Attribute Name:WeightAttribute Label:WeightAttribute Definition:Wet weight of that individualStorage Type:floatMeasurement Scale:Units: gramNumber Type: realMissing Value Code:NA (Wet weight was not recorded)Attribute Name:EmptyAttribute Label:EmptyAttribute Definition:Whether or not the stomach was emptyStorage Type:stringMeasurement Scale:0= Not empty
1= Empty stomach
Missing Value Code:Attribute Name:PreyAttribute Label:PreyAttribute Definition:Lowest possible taxonomic group for that diet itemStorage Type:stringMeasurement Scale:textMissing Value Code:Attribute Name:VolumeAttribute Label:VolumeAttribute Definition:Volume of prey in milliliters, 0 was recorded for empty stomachsStorage Type:floatMeasurement Scale:Units: milliliterNumber Type: realMissing Value Code:Attribute Name:CountAttribute Label:CountAttribute Definition:Count of that prey item for that individual, 0 recorded for empty stomachsStorage Type:floatMeasurement Scale:Units: numberNumber Type: realMissing Value Code:
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Data Table: Stable isotope data for fishes, invertebrates, and basal resources from Everglades National Park collected from wet-season spikerush-dominated marshes in 1994.Attribute Name:SpeciesAttribute Label:SpeciesAttribute Definition:Lowest possible taxonomic group for that sample, often genus and speciesStorage Type:stringMeasurement Scale:textMissing Value Code:Attribute Name:CodeAttribute Label:CodeAttribute Definition:Numeric identifier for each level of SpeciesStorage Type:floatMeasurement Scale:Units: numberNumber Type: integerMissing Value Code:Attribute Name:d15NAttribute Label:d15NAttribute Definition:Ratio between the two nitrogen stable isotopes - 14N and 15N - relative to a lab standardStorage Type:floatMeasurement Scale:Units: permilNumber Type: realMissing Value Code:-9999 (No nitrogen peak was recorded)Attribute Name:d13CAttribute Label:d13CAttribute Definition:Ratio between the two carbon stable isotopes - 12C and 13C - relative to a lab standardStorage Type:floatMeasurement Scale:Units: permilNumber Type: realMissing Value Code:Attribute Name:CommentsAttribute Label:CommentsAttribute Definition:Comments from data analysis for that sampleStorage Type:stringMeasurement Scale:removed from analyses, data point doesn't make sense, except for contamination= removed from analyses, data point doesn't make sense, except for contamination
Missing Value Code:NA (No comment was recorded)
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Data Table: Wide format of counts of stomachs.Attribute Name:SpeciesAttribute Label:SpeciesAttribute Definition:Numeric code for each speciesStorage Type:floatMeasurement Scale:Units: numberNumber Type: integerMissing Value Code:Attribute Name:SizeAttribute Label:SizeAttribute Definition:Numeric size class based on standard lengthStorage Type:floatMeasurement Scale:Units: numberNumber Type: realMissing Value Code:Attribute Name:DateAttribute Label:SeasonAttribute Definition:Indicates the season, either wet or dry, in which the sample was collected, 1 - wet season; 2 - dry seasonStorage Type:floatMeasurement Scale:Units: numberNumber Type: realMissing Value Code:Attribute Name:Habitat - codesAttribute Label:Habitat - codesAttribute Definition:Habitat in which the sample was collectedStorage Type:stringMeasurement Scale:1= Alligator-engineered pond
2= Spikerush (Eleocharis spp) dominated marsh
3= Sawgrass (Cladium jamaicense) dominated marsh
4= canal
5= canal
6= canal
7= canal
Missing Value Code:Attribute Name:codeAttribute Label:codeAttribute Definition:Aggregate code for species, season, and habitatStorage Type:floatMeasurement Scale:Units: numberNumber Type: integerMissing Value Code:Attribute Name:Habitat - OrigAttribute Label:Habitat - OrigAttribute Definition:Field note info, can be disregardedStorage Type:floatMeasurement Scale:Units: numberNumber Type: integerMissing Value Code:Attribute Name:TLAttribute Label:TLAttribute Definition:Total length of the fishStorage Type:floatMeasurement Scale:Units: millimeterNumber Type: realMissing Value Code:-9999 (total length was not recorded)Attribute Name:SLAttribute Label:SLAttribute Definition:Standard length of that fishStorage Type:floatMeasurement Scale:Units: millimeterNumber Type: realMissing Value Code:-9999 (No length recorded, specimen may have been damaged)Attribute Name:WeightAttribute Label:WeightAttribute Definition:Wet weight of that individualStorage Type:floatMeasurement Scale:Units: gramNumber Type: realMissing Value Code:-9999 (weight was not recorded)Attribute Name:SpecimenAttribute Label:SpecimenAttribute Definition:Consecutive specimen numbersStorage Type:floatMeasurement Scale:Units: numberNumber Type: integerMissing Value Code:Attribute Name:EmptyAttribute Label:EmptyAttribute Definition:Whether or not the stomach was emptyStorage Type:stringMeasurement Scale:0= Not empty
1= stomach was empty
Missing Value Code:Attribute Name:A. natalisAttribute Label:A. natalisAttribute Definition:Counts of Yellow Bullhead Catfish, Ameiurus natalisStorage Type:floatMeasurement Scale:Units: numberNumber Type: realMissing Value Code:Attribute Name:CentrachidaeAttribute Label:CentrachidaeAttribute Definition:Counts of prey from the family CentrarchidaeStorage Type:floatMeasurement Scale:Units: numberNumber Type: realMissing Value Code:Attribute Name:ProcambarusAttribute Label:ProcambarusAttribute Definition:Counts of prey from the genus Procambarus (crayfish)Storage Type:floatMeasurement Scale:Units: numberNumber Type: realMissing Value Code:Attribute Name:PalaemonetesAttribute Label:PalaemonetesAttribute Definition:Counts of grass shrimp, Palaemonetes paludosusStorage Type:floatMeasurement Scale:Units: numberNumber Type: realMissing Value Code:Attribute Name:Misc. FishAttribute Label:Misc. FishAttribute Definition:Counts of unidentified fish preyStorage Type:floatMeasurement Scale:Units: numberNumber Type: realMissing Value Code:Attribute Name:OdonataAttribute Label:OdonataAttribute Definition:Counts of odonate prey (dragonfly and damselfly larvae)Storage Type:floatMeasurement Scale:Units: numberNumber Type: realMissing Value Code:Attribute Name:Vasc. PlantsAttribute Label:Vasc. PlantsAttribute Definition:Counts of vascular plants in stomachsStorage Type:floatMeasurement Scale:Units: numberNumber Type: realMissing Value Code:Attribute Name:DipteraAttribute Label:DipteraAttribute Definition:Counts of dipteran prey (fly and mosquito larvae)Storage Type:floatMeasurement Scale:Units: numberNumber Type: realMissing Value Code:Attribute Name:AranaeAttribute Label:AranaeAttribute Definition:Counts of Aranea (spiders) in stomachsStorage Type:floatMeasurement Scale:Units: numberNumber Type: realMissing Value Code:Attribute Name:Belo/NaucorAttribute Label:Belo/NaucorAttribute Definition:Counts of prey from genus Belostoma or family Naucoridae (most commonly Pelocoris femoratus)Storage Type:floatMeasurement Scale:Units: numberNumber Type: integerMissing Value Code:Attribute Name:ColeopteraAttribute Label:ColeopteraAttribute Definition:Counts of coleopteran (beetle) larvaeStorage Type:floatMeasurement Scale:Units: numberNumber Type: realMissing Value Code:Attribute Name:EphemopteraAttribute Label:EphemopteraAttribute Definition:Counts of emphemeropteran (mayfly) larvaeStorage Type:floatMeasurement Scale:Units: numberNumber Type: integerMissing Value Code:Attribute Name:H. aztecaAttribute Label:H. aztecaAttribute Definition:Counts of amphipods in stomachs (identified as Hyalella azteca)Storage Type:floatMeasurement Scale:Units: numberNumber Type: integerMissing Value Code:Attribute Name:MolluscaAttribute Label:MolluscaAttribute Definition:Counts of mollusk prey in stomachs (mostly aquatic snails)Storage Type:floatMeasurement Scale:Units: numberNumber Type: integerMissing Value Code:Attribute Name:HemipteraAttribute Label:HemipteraAttribute Definition:Counts of hemipteran larvae in stomachsStorage Type:floatMeasurement Scale:Units: numberNumber Type: integerMissing Value Code:Attribute Name:HymenopteraAttribute Label:HymenopteraAttribute Definition:Counts of hymenoptera in stomachsStorage Type:floatMeasurement Scale:Units: numberNumber Type: realMissing Value Code:Attribute Name:OligocheataAttribute Label:OligocheataAttribute Definition:Counts of oligochaete preyStorage Type:floatMeasurement Scale:Units: numberNumber Type: realMissing Value Code:Attribute Name:Green algaeAttribute Label:Green algaeAttribute Definition:Counts of green algae in stomachsStorage Type:floatMeasurement Scale:Units: numberNumber Type: realMissing Value Code:Attribute Name:Vasc. DetritusAttribute Label:Vasc. DetritusAttribute Definition:Counts of vascular detritus in stomachsStorage Type:floatMeasurement Scale:Units: numberNumber Type: realMissing Value Code:Attribute Name:Misc.Attribute Label:Misc.Attribute Definition:Counts of unidentified preyStorage Type:floatMeasurement Scale:Units: numberNumber Type: realMissing Value Code:Attribute Name:PeriphytonAttribute Label:PeriphytonAttribute Definition:Counts of periphyton in stomachsStorage Type:floatMeasurement Scale:Units: numberNumber Type: realMissing Value Code:Attribute Name:CladoceraAttribute Label:CladoceraAttribute Definition:Counts of cladoceran preyStorage Type:floatMeasurement Scale:Units: numberNumber Type: integerMissing Value Code:Attribute Name:CopepodaAttribute Label:CopepodaAttribute Definition:Counts of copepods in stomachsStorage Type:floatMeasurement Scale:Units: numberNumber Type: integerMissing Value Code:Attribute Name:OstracodaAttribute Label:OstracodaAttribute Definition:Counts of ostracod prey in stomachsStorage Type:floatMeasurement Scale:Units: numberNumber Type: integerMissing Value Code:Attribute Name:MysidsAttribute Label:MysidsAttribute Definition:Counts of mysid shrimpStorage Type:floatMeasurement Scale:Units: numberNumber Type: integerMissing Value Code:Attribute Name:MitesAttribute Label:MitesAttribute Definition:Counts of aquatic mites in stomachsStorage Type:floatMeasurement Scale:Units: numberNumber Type: integerMissing Value Code:Attribute Name:CollembolaAttribute Label:CollembolaAttribute Definition:Counts of collembolan prey (springtails) in stomachsStorage Type:floatMeasurement Scale:Units: numberNumber Type: integerMissing Value Code:Attribute Name:HomopteraAttribute Label:HomopteraAttribute Definition:Counts of homopteran preyStorage Type:floatMeasurement Scale:Units: numberNumber Type: realMissing Value Code:Attribute Name:ChironomidAttribute Label:ChironomidAttribute Definition:Counts of chironomid (midge) larvae in stomachsStorage Type:floatMeasurement Scale:Units: numberNumber Type: realMissing Value Code:Attribute Name:TrichopteraAttribute Label:TrichopteraAttribute Definition:Counts of trichopteran (caddisfly) larvae in stomachsStorage Type:floatMeasurement Scale:Units: numberNumber Type: integerMissing Value Code:Attribute Name:Det/Alg mixAttribute Label:Det/Alg mixAttribute Definition:Counts of detritus and algae mixStorage Type:floatMeasurement Scale:Units: numberNumber Type: realMissing Value Code:Attribute Name:Misc. InsectaAttribute Label:Misc. InsectaAttribute Definition:Counts of unidentified invertebrate preyStorage Type:floatMeasurement Scale:Units: numberNumber Type: realMissing Value Code:Attribute Name:Argulus spAttribute Label:Argulus spAttribute Definition:Counts of Argulus (fish lice) in stomachsStorage Type:floatMeasurement Scale:Units: numberNumber Type: integerMissing Value Code:Attribute Name:CyprinodontAttribute Label:CyprinodontAttribute Definition:Counts of cyprinodontiform fishes in stomachsStorage Type:floatMeasurement Scale:Units: numberNumber Type: realMissing Value Code:
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Data Table: Stomach content data collected for fishes from Everglades National Parked between 1977 and 1981. This file is a combined version of counts and volume that is cleaned and convenient to work with. Use the wide-format files to rerun the associated R code.
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MethodsMethod Step
Description
Field collections
Fishes and invertebrates analyzed for this project were collected between 1977 and 1994. Most specimens (> 90%) were collected between 1977 and 1981, but supplemental collections were taken from the same study area at the same time of year during the mid-1990s to increase sample sizes for less common species, mainly larger predators. Collections in the mid-1990s included non-native species that had colonized the Everglades (see Kline et al., 2014 for timeline), and all specimens for stable-isotope analysis. Wet-season samples were collected between January and early March, and dry-season samples in April. Most fishes were collected with 5% rotenone solution (Nox- Fish®), along with electrofishing, cast nets, dip nets, and angling. All fishes were preserved in 10% buffered formalin and transferred to 70% ethanol, except those captured for isotopic analysis, which were euthanized with MS-222 and frozen. In total, we collected 3509 individuals from thirty-two species, of which 600 had empty stomachs (see Arrington et al., 2002). We analyzed stomach contents for the remaining 2909 fishes, 83% of those collected. The target sample size was twenty-five individuals per species size class per habitat-season level and the average was sixteen.
Laboratory analyses
We separated species into body-size groups based on length, termed species size classes, to examine the role of ontogeny in trophic resource partitioning within and among species, because most fishes undergo a change in diet with growth (Wainwright and Richard, 1995). We recorded the length and wet mass of each specimen before removing the stomach. In species without defined stomachs, we removed the digestive tract from the esophagus to the first bend in the tract. Each stomach was flushed of contents which were examined with a Wild®5A dissecting microscope and identified to the lowest-level taxon possible. Fragmented remains of insects, fishes, and crustaceans were termed “unidentifiable.” Insect taxa are larval forms, unless otherwise indicated. The number of individuals per prey type were recorded for individual consumers (Hyslop, 1980). For stable-isotope samples, we dissected muscle from small fishes and invertebrates for drying at 50°C, then pulverized it (Fry, 2006). Samples of major primary producers were dried and powdered after being acid-washed in HCl before drying to remove carbonates. Three to five individuals were analyzed to produce a mean value per taxon. The samples were analyzed shortly thereafter in the mid-1990s at the University of Georgia Institute of Ecology isotope laboratory. The isotopic standards used for δ13C and δ15N were Pee Dee Belemnite (PDB) and air, respectively. Average isotopic error of replicate standards was δ15N ≤ 0.2 ‰ and δ13C ≤ 0.1 ‰.
References:
Arrington, D. A., Winemiller, K. O., Loftus, W. F., & Akin, S. (2002). How often do fishes “run on empty”?. Ecology, 83(8), 2145-2151.
Fry, B. (2006). Stable isotope ecology (Vol. 521, p. 318). New York: Springer.
Hyslop, E. J. (1980). Stomach contents analysis—a review of methods and their application. Journal of fish biology, 17(4), 411-429.
Kline, J. L., Loftus, W. F., Kotun, K., Trexler, J. C., Rehage, J. S., Lorenz, J. J., & Robinson, M. (2014). Recent fish introductions into Everglades National Park: an unforeseen consequence of water management?. Wetlands, 34, 175-187.
Wainwright, P. C., & Richard, B. A. (1995). Predicting patterns of prey use from morphology of fishes. Environmental biology of fishes, 44, 97-113.
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Distribution and Intellectual RightsOnline distribution
https://pasta.lternet.edu/package/data/eml/knb-lter-fce/1263/3/f5c397e8a8fbe38884ceb82a1fefd89d
Intellectual Rights
This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data ("Data User" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.
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KeywordsStomach Contents, Everglades National Park, FCE LTER, Florida Coastal Everglades LTER, fishes, stable isotopes, food webs, populations, populations
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Dataset Contact
- Name: Dr. Peter Flood
- Position: Postdoctoral Research Fellow
- Email: pjfloodecology@gmail.com
- Position: Information Manager
- Organization: Florida Coastal Everglades LTER
- Address: Florida International University
11200 SW 8th Street, OE 148
Miami, FL 33199 USA - Email: fcelter@fiu.edu
- URL: https://fcelter.fiu.edu
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Data Table and FormatData Table: Stomach content data collected for fishes from Everglades National Parked between 1977 and 1981. This file is a combined version of counts and volume that is cleaned and convenient to work with. Use the wide-format files to rerun the associated R code.Entity Name:Food_Webs_2023_manuscript_stomach_content_dataEntity Description:Stomach content data collected for fishes from Everglades National Parked between 1977 and 1981. This file is a combined version of counts and volume that is cleaned and convenient to work with. Use the wide-format files to rerun the associated R code.Object Name:FCE1263_Food_Webs_2023_manuscript_stomach_content_data.csvNumber of Header Lines:1Attribute Orientation:columnField Delimiter:,Number of Records:119306
Data Table: Stable isotope data for fishes, invertebrates, and basal resources from Everglades National Park collected from wet-season spikerush-dominated marshes in 1994.Entity Name:Food_Webs_2023_manuscript_stable_isotope_dataEntity Description:Stable isotope data for fishes, invertebrates, and basal resources from Everglades National Park collected from wet-season spikerush-dominated marshes in 1994.Object Name:FCE1263_Food_Webs_2023_manuscript_stable_isotope_data.csvNumber of Header Lines:1Attribute Orientation:columnField Delimiter:,Number of Records:159
Data Table: Wide format of counts of stomachs.Entity Name:All_Specimen_by_Number_CorrectEntity Description:Wide format of counts of stomachs.Object Name:FCE1263_All_Specimen_by_Number_Correct.csvNumber of Header Lines:1Attribute Orientation:columnField Delimiter:,Number of Records:3509
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Metadata Provider
- Organization: Florida Coastal Everglades LTER
- Address: Florida International University
11200 SW 8th Street, OE 148
Miami, FL 33199 USA - Phone: 305-348-6054
- Email: fcelter@fiu.edu
- URL: https://fcelter.fiu.edu